I'm beginning to get worried that Nikita is overextending itself. There are already several major conflicts going on between the various factions we know, with interests colliding and crossing at every turn. "Clawback" introduces yet another one without resolving any of the previous conflicts: Division vs. Oversight. Now, it may turn out that all the conflicts get resolved in one fell swoop, so it doesn't matter in the long run, but it's worrisome that so much is piling up without anything be dealt with first.
At the same time, with Ryan presumed dead and working for Amanda, there will be plenty of plots available in the future. There are definitely more moving pieces this season than in the first, so pretty much anything could happen.